Package: shiftR 1.5

shiftR: Fast Enrichment Analysis via Circular Permutations

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.

Authors:Andrey A Shabalin [aut, cre], Edwin J C G van den Oord [aut]

shiftR_1.5.tar.gz
shiftR_1.5.zip(r-4.5)shiftR_1.5.zip(r-4.4)shiftR_1.5.zip(r-4.3)
shiftR_1.5.tgz(r-4.5-x86_64)shiftR_1.5.tgz(r-4.5-arm64)shiftR_1.5.tgz(r-4.4-x86_64)shiftR_1.5.tgz(r-4.4-arm64)shiftR_1.5.tgz(r-4.3-x86_64)shiftR_1.5.tgz(r-4.3-arm64)
shiftR_1.5.tar.gz(r-4.5-noble)shiftR_1.5.tar.gz(r-4.4-noble)
shiftR_1.5.tgz(r-4.4-emscripten)shiftR_1.5.tgz(r-4.3-emscripten)
shiftR.pdf |shiftR.html✨
shiftR/json (API)

# Install 'shiftR' in R:
install.packages('shiftR', repos = c('https://andreyshabalin.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/andreyshabalin/shiftr/issues

On CRAN:

4.04 score 1 stars 11 scripts 165 downloads 2 mentions 14 exports 0 dependencies

Last updated 6 years agofrom:5a28fc6ed0. Checks:4 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 02 2025
R-4.5-win-x86_64NOTEFeb 02 2025
R-4.5-mac-x86_64NOTEFeb 02 2025
R-4.5-mac-aarch64NOTEFeb 02 2025
R-4.5-linux-x86_64NOTEFeb 02 2025
R-4.4-win-x86_64NOTEFeb 02 2025
R-4.4-mac-x86_64NOTEFeb 02 2025
R-4.4-mac-aarch64NOTEFeb 02 2025
R-4.3-win-x86_64OKFeb 02 2025
R-4.3-mac-x86_64OKFeb 02 2025
R-4.3-mac-aarch64OKFeb 02 2025

Exports:cramerVenrichmentAnalysisgetNOffsetsMaxgetOffsetsAllgetOffsetsRandomgetOffsetsUniformmatchDatasetsshiftrPermBinaryshiftrPrepareLeftshiftrPrepareRightsimulateBinarysimulateNumericsimulatePValuessinglePermutation

Dependencies:

Overview of shiftR Package

Rendered fromintro.Rmdusingknitr::rmarkdownon Feb 02 2025.

Last update: 2018-01-15
Started: 2017-08-22