Package: shiftR 1.5

shiftR: Fast Enrichment Analysis via Circular Permutations

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.

Authors:Andrey A Shabalin [aut, cre], Edwin J C G van den Oord [aut]

shiftR_1.5.tar.gz
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shiftR_1.5.tgz(r-4.4-emscripten)shiftR_1.5.tgz(r-4.3-emscripten)
shiftR.pdf |shiftR.html✨
shiftR/json (API)

# Install 'shiftR' in R:
install.packages('shiftR', repos = c('https://andreyshabalin.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/andreyshabalin/shiftr/issues

On CRAN:

4.04 score 1 stars 11 scripts 120 downloads 2 mentions 14 exports 0 dependencies

Last updated 6 years agofrom:5a28fc6ed0. Checks:OK: 4 NOTE: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 04 2024
R-4.5-win-x86_64NOTENov 04 2024
R-4.5-linux-x86_64NOTENov 04 2024
R-4.4-win-x86_64NOTENov 04 2024
R-4.4-mac-x86_64NOTENov 04 2024
R-4.4-mac-aarch64NOTENov 04 2024
R-4.3-win-x86_64OKNov 04 2024
R-4.3-mac-x86_64OKNov 04 2024
R-4.3-mac-aarch64OKNov 04 2024

Exports:cramerVenrichmentAnalysisgetNOffsetsMaxgetOffsetsAllgetOffsetsRandomgetOffsetsUniformmatchDatasetsshiftrPermBinaryshiftrPrepareLeftshiftrPrepareRightsimulateBinarysimulateNumericsimulatePValuessinglePermutation

Dependencies:

Overview of shiftR Package

Rendered fromintro.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2018-01-15
Started: 2017-08-22