Overview | Permutation analysis on matched binary data sets | Enrichment testing for two sets of p-values \ | Enrichment testing with shiftR | Matching data sets by location
Package: shiftR 1.5
shiftR: Fast Enrichment Analysis via Circular Permutations
Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.
Authors:
shiftR_1.5.tar.gz
shiftR_1.5.zip(r-4.7)shiftR_1.5.zip(r-4.6)shiftR_1.5.zip(r-4.5)
shiftR_1.5.tgz(r-4.6-x86_64)shiftR_1.5.tgz(r-4.6-arm64)shiftR_1.5.tgz(r-4.5-x86_64)shiftR_1.5.tgz(r-4.5-arm64)
shiftR_1.5.tar.gz(r-4.7-arm64)shiftR_1.5.tar.gz(r-4.7-x86_64)shiftR_1.5.tar.gz(r-4.6-arm64)shiftR_1.5.tar.gz(r-4.6-x86_64)
shiftR_1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
shiftR/json (API)
| # Install 'shiftR' in R: |
| install.packages('shiftR', repos = c('https://andreyshabalin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/andreyshabalin/shiftr/issues
Last updated from:5a28fc6ed0. Checks:11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 161 | ||
| linux-devel-x86_64 | NOTE | 112 | ||
| source / vignettes | OK | 157 | ||
| linux-release-arm64 | NOTE | 127 | ||
| linux-release-x86_64 | NOTE | 158 | ||
| macos-release-arm64 | NOTE | 73 | ||
| macos-release-x86_64 | NOTE | 159 | ||
| macos-oldrel-arm64 | NOTE | 91 | ||
| macos-oldrel-x86_64 | NOTE | 199 | ||
| windows-devel | NOTE | 68 | ||
| windows-release | NOTE | 74 | ||
| windows-oldrel | NOTE | 86 | ||
| wasm-release | OK | 129 |
Exports:cramerVenrichmentAnalysisgetNOffsetsMaxgetOffsetsAllgetOffsetsRandomgetOffsetsUniformmatchDatasetsshiftrPermBinaryshiftrPrepareLeftshiftrPrepareRightsimulateBinarysimulateNumericsimulatePValuessinglePermutation
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fast Enrichment Analysis via Circular Permutations | shiftR-package |
| Calculate Cramer's V (phi) Coefficient | cramerV |
| Fast Enrichment Testing via Circular Permutations on Non-Binary Outcomes | enrichmentAnalysis |
| Generate Random or Uniformly Spaced Permutation Offsets | getNOffsetsMax getOffsetsAll getOffsetsRandom getOffsetsUniform |
| Match Two Data Sets by Location | matchDatasets |
| Fast Enrichment Testing on Binary Outcomes via Circular Permutations | shiftrPermBinary |
| Prepare Data for Fast Circular Permutation Analysis | shiftrPrepareLeft shiftrPrepareRight |
| Generate Artificial Data for Tests and Illustrations | simulateBinary simulateNumeric simulatePValues |
| Count Feature Overlap Under a Permutation | singlePermutation |
