Package: shiftR 1.5

shiftR: Fast Enrichment Analysis via Circular Permutations

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.

Authors:Andrey A Shabalin [aut, cre], Edwin J C G van den Oord [aut]

shiftR_1.5.tar.gz
shiftR_1.5.zip(r-4.5)shiftR_1.5.zip(r-4.4)shiftR_1.5.zip(r-4.3)
shiftR_1.5.tgz(r-4.5-x86_64)shiftR_1.5.tgz(r-4.5-arm64)shiftR_1.5.tgz(r-4.4-x86_64)shiftR_1.5.tgz(r-4.4-arm64)shiftR_1.5.tgz(r-4.3-x86_64)shiftR_1.5.tgz(r-4.3-arm64)
shiftR_1.5.tar.gz(r-4.5-noble)shiftR_1.5.tar.gz(r-4.4-noble)
shiftR_1.5.tgz(r-4.4-emscripten)shiftR_1.5.tgz(r-4.3-emscripten)
shiftR.pdf |shiftR.html✨
shiftR/json (API)

# Install 'shiftR' in R:
install.packages('shiftR', repos = c('https://andreyshabalin.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/andreyshabalin/shiftr/issues

On CRAN:

Conda:

4.04 score 1 stars 11 scripts 155 downloads 2 mentions 14 exports 0 dependencies

Last updated 6 years agofrom:5a28fc6ed0. Checks:4 OK, 7 NOTE, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 04 2025
R-4.5-win-x86_64NOTEMar 04 2025
R-4.5-mac-x86_64NOTEMar 04 2025
R-4.5-mac-aarch64WARNINGMar 04 2025
R-4.5-linux-x86_64NOTEMar 04 2025
R-4.4-win-x86_64NOTEMar 04 2025
R-4.4-mac-x86_64NOTEMar 04 2025
R-4.4-mac-aarch64NOTEMar 04 2025
R-4.4-linux-x86_64NOTEMar 04 2025
R-4.3-win-x86_64OKMar 04 2025
R-4.3-mac-x86_64OKMar 04 2025
R-4.3-mac-aarch64OKMar 04 2025

Exports:cramerVenrichmentAnalysisgetNOffsetsMaxgetOffsetsAllgetOffsetsRandomgetOffsetsUniformmatchDatasetsshiftrPermBinaryshiftrPrepareLeftshiftrPrepareRightsimulateBinarysimulateNumericsimulatePValuessinglePermutation

Dependencies:

Overview of shiftR Package

Rendered fromintro.Rmdusingknitr::rmarkdownon Mar 04 2025.

Last update: 2018-01-15
Started: 2017-08-22